BGISEQ-論文リスト

 

BGISEQー論文リスト(抜粋)

 

  1. Comparative transcriptome analysis of chemosensory genes in two sister leaf beetles provides insights into chemosensory speciation. (2016). Insect Biochemistry and Molecular Biology.
  2. Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice (2017). Rice
  3. Coordination of metabolic pathways: Enhanced carbon conservation in 1,3-propanediol production by coupling with optically pure lactate biosynthesis (2017). Metabolic Engineering
  4. Drug induces depression-like phenotypes and alters gene expression profiles in Drosophila (2017).Brain Research Bulletin
  5. AtACS8 plays a critical role in the early biosynthesis of ethylene elicited by copper ions in Arabidopsis (2017). Journal of Cell Science
  6. Draft genome sequence of the Tibetan medicinal herb, Rhodiola crenulata (2017). GigaScience
  7. Establishment of a normal-derived estrogen receptor-positive cell line comparable to the prevailing human breast cancer subtype (2017). Oncotarget
  8. PBRM1 restricts the basal activity of innate immune system through repressing RIG-I-like receptor signaling and is a potential prognostic biomarker for colon cancer (2017). The Journal of  Pathology
  9. Exploring gene expression changes in the amphioxus gill after poly(I:C) challenge using digital expression profiling (2017). Fish & Shellfish Immunology
  10.  Genome-wide analysis of gene expression profile in the respiratory tree of sea cucumber (Apostichopus japonicus) in response to hypoxia conditions (2017). Journal of the Marine Biological Association of the United Kingdom
  11.  Overexpression of placenta specific 8 is associated with malignant progression and poor prognosis of clear cell renal cell carcinoma (2017). International Urology and Nephrology
  12.  FH535 Inhibits Proliferation and Motility of Colon Cancer Cells by Targeting Wnt/β-catenin Signaling Pathway (2017). Journal of Cancer
  13.  Recessive mutation in EXOSC3 associates with mitochondrial dysfunction and pontocerebellar hypoplasia (2017). Mitochondrion
  14.  Genome-scale mRNA transcriptomic insights into the responses of oilseed rape (Brassica napus L.) to varying boron availabilities (2017). Plant and Soil
  15.  Nuclear carbonic anhydrase 6B associates with PRMT5 to epigenetically promote IL-12 expression in innate response (2017). PNAS
  16.  Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity (2017). Cell
  17.  Data Descriptor: RNA sequencing analysis of activated macrophages treated with the anti-HIV ABX464 in intestinal inflammation (2017). Scientific Data
  18.  Using Next-Generation Sequencing to Detect Differential Expression Genes in Bradysia odoriphaga after Exposure to Insecticides (2017). International Journal of Molecular Sciences
  19.  cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs. (2016). Clinical Epigenetics
  20.  The FOXN3-NEAT1-SIN3A repressor complex promotes progression of hormonally responsive breast cancer. (2017). The Journal of Clinical Investigation
  21.  Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in Branchiostoma belcheri by deep sequencing and bioinformatics (2017). Oncotarget
  22.  A reference human genome dataset of the BGISEQ-500 sequencer. (2017). GigaScience
  23.  Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. (2017). GigaScience
  24.  Gene expression profiling of ramie roots during hydroponic induction and adaption to aquatic environment (2017). Genomics Data
  25.  Direct inhibition of ACTN4 by ellagic acid limits breast cancer metastasis via regulation of β-catenin stabilization in cancer stem cells (2017). Journal of Experimental & Clinical Cancer Research
  26.  Systemic response of the stony coral Pocillopora damicornis against acute cadmium stress (2017).Aquatic Toxicology
  27.  Orally Administrated Baker’s Yeast beta-Glucan Promotes Glucose and Lipid Homeostasis in the Livers of ob/ob Mice (2017). Journal of Agricultural and Food Chemistry
  28.  Characteristics of NK cells from leukemic microenvironment in MLL-AF9 induced acute myeloid leukemia (2017). Molecular Immunology
  29.  Effects of In Utero PFOS Exposure on Transcriptome, Lipidome and Function of Mouse Testis (2017). Environmental Science & Technology
  30.  Identification of differentially expressed genes involved in spore germination of Penicillium expansum by comparative transcriptome and proteome approaches (2017). MicrobiologyOpen
  31.  Differential gene expression in the intestine of sea cucumber (Apostichopus japonicus) under low and high salinity conditions (2017). Comparative Biochemistry and Physiology D-Genomics & Proteomics
  32.  High expression of diffuse panbronchiolitis critical region 1 gene promotes cell proliferation, migration and invasion in pancreatic ductal adenocarcinoma (2017). Biochemical and Biophysical Research Communications
  33.  Probing impaired neurogenesis in human brain organoids exposed to alcohol (2017). Integrative Biology
  34.  Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing (2018). PLOS ONE
  35.  Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing (2017). GigaScience
  36.  Transcriptome sequencing and comparative analysis of differentially-expressed isoforms in the roots of Halogeton glomeratus under salt stress (2017). Gene
  37.  Transcriptomic analysis reveals transgenerational effect of hypoxia on the neural control of testicular functions (2017). Aquatic Toxicology
  38.  Effects of In Utero PFOS Exposure on Transcriptome, Lipidome and Function of Mouse Testis (2017). Environmental Science & Technology
  39.  Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing (2018). PLOS ONE
  40.  Phytochrome A Negatively Regulates the Shade Avoidance Response by Increasing Auxin/Indole Acidic Acid Protein Stability (2018). Developmental Cell
  41.  Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon (2018). PLOS ONE
  42.  A novel HD-ZIP IV/MIXTA complex promotes glandular trichome initiation and cuticle development in Artemisia annua (2018).New Phytologist
  43.  A novel mutation in PRPF31, causative of autosomal dominant retinitis pigmentosa, using the BGISEQ-500 sequencer (2018). International journal of ophthalmology
  44.  Preinduction with bone morphogenetic protein-2 enhances cardiomyogenic differentiation of c-kit+ mesenchymal stem cells and repair of infarcted myocardium (2018). International Journal of Cardiology
  45.  The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides (2018). Journal of Experimental Botany
  46.  An integrated biomanufacturing platform for the large-scale expansion and neuronal differentiation of human pluripotent stem cell-derived neural progenitor cells (2018). Acta Biomaterialia
  47.  Cambogin suppresses dextran sulphate sodiuminduced colitis by enhancing Treg cell stability and function (2018). British journal of pharmacology
  48.  FBXL10 contributes to the development of diffuse large B-cell lymphoma by epigenetically enhancing ERK1/2 signaling pathway (2018). Cell death & disease
  49.  Arabidopsis thaliana ACS8 plays a crucial role in the early biosynthesis of ethylene elicited by Cu2+ ions (2018). JOURNAL OF CELL SCIENCE
  50.  Dual extra-retinal origins of microglia in the model of retinal microglia repopulation (2018). Cell Discover
  51.  Overcoming erlotinib resistance in EGFR mutation-positive lung adenocarcinomas through repression of phosphoglycerate dehydrogenase (2018). Theranostics
  52.  A small set of differentially expressed genes was associated with two color morphs in natural populations of the pea aphid Acyrthosiphon pisum (2018). Gene
  53.  Selenite and methylseleninic acid epigenetically affects distinct gene sets in myeloid leukemia: A genome wide epigenetic analysis (2018). Free Radical Biology and Medicine
  54.  Repopulated microglia are solely derived from the proliferation of residual microglia after acute depletion (2018). Nature Neuroscience
  55.  A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses (2018). Microbiome
  56.  Transcriptome resequencing analysis of the responses of Ty5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars (2018). PeerJ
  57.  Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial (2018). BMJ OPEN
  58.  Autophagy mediates glucose starvation-induced glioblastoma cell quiescence and chemoresistance through coordinating cell metabolism, cell cycle, and survival (2018). Cell death & disease
  59.  KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration (2018). Cell research
  60.  The LIS1/NDE1 Complex Is Essential for FGF Signaling by Regulating FGF Receptor Intracellular Trafficking (2018). Cell Reports
  61.  A guide to sequence your favorite plant genomes (2018). Applications in plant sciences
  62.  The lncRNA MACC1-AS1 promotes gastric cancer cell metabolic plasticity via AMPK/Lin28 mediated mRNA stability of MACC1 (2018). Molecular Cancer
  63.  Comparative genome-wide analysis of extracellular small RNAs from the mucormycosis pathogen Rhizopus delemar (2018). Scientific Reports
  64.  TBX3 promotes proliferation of papillary thyroid carcinoma cells through facilitating PRC2-mediated p57KIP2 repression (2018). Oncogene
  65.  Silkworm Pupa Protein Hydrolysate Induces Mitochondria-Dependent Apoptosis and S Phase Cell Cycle Arrest in Human Gastric Cancer SGC-7901 Cells (2018). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
  66.  Hydrogen peroxide positively regulates brassinosteroid signaling through oxidation of the BRASSINAZOLE-RESISTANT1 transcription factor (2018). Nature Communications
  67.  Small molecules capable of activating DNA methylation–repressed genes targeted by the p38 mitogen-activated protein kinase pathway (2018). Journal of Biological Chemistry
  68.  PAF-Myc-Controlled Cell Stemness Is Required for Intestinal Regeneration and Tumorigenesis (2018). Developmental cell
  69.  Leukemia cell-derived microvesicles induce T cell exhaustion via miRNA delivery (2018). OncoImmunology
  70.  RNA-Seq analysis of global transcriptomic changes suggests a roles for the MAPK pathway and carbon metabolism in cell wall maintenance in a Saccharomyces cerevisiae FKS1 mutant (2018). Biochemical and Biophysical Research Communications
  71.  The biosynthetic origin of psychoactive kavalactones in kava (2018). BioRxiv
  72.  Identification and Characterization of als Genes Involved in D-Allose Metabolism in Lineage II Strain of Listeria monocytogenes (2018). Frontiers in Microbiology
  73.  In Situ Lignin Bioconversion Promotes Complete Carbohydrate Conversion of Rice Straw by Cupriavidus basilensis B-8 (2018). ACS Sustainable Chemistry & Engineering
  74.  Cranial Irradiation Induces Hypothalamic Injury and Late-Onset Metabolic Disturbances in Juvenile Female Rats (2018). DEVELOPMENTAL NEUROSCIENCE
  75.  Antifbrogenic Potential of Mesenchymal Stromal Cells in Treating Fibrosis in Crohn’s Disease (2018). Digestive Diseases and Sciences
  76.  Quality Control of Next-generation Sequencing-based In vitro Diagnostic Test for Onco-relevant Mutations Using Multiplex Reference Materials in Plasma (2018). Journal of Cancer
  77.  An Interleukin-25-Mediated Autoregulatory Circuit in Keratinocytes Plays a Pivotal Role in Psoriatic Skin Inflammation (2018). Immunity
  78.  Roles of the CSE1L-mediated nuclear import pathway in epigenetic silencing (2018). PNAS
  79.  The Catabolite Repressor/Activator Cra Is a Bridge Connecting Carbon Metabolism and Host Colonization in the Plant Drought Resistance-Promoting Bacterium Pantoea alhagi LTYR-11Z (2018). Applied and Environmental Microbiology
  80.  Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly (2018). bioRxiv
  81.  Identification of a mutLhomolog 1 mutation via wholeexome sequencing in a Chinese family with Gardner syndrome (2018). Molecular Medicine Reports
  82.  Differential gene expression in Escherichia coli during aerosolization from liquid suspension (2018). Applied Microbiology and Biotechnology
  83.  A gene catalogue of the Sprague-Dawley rat gut metagenome (2018). GigaScience
  84.  Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia (2018). Mitochondrial DNA Part B
  85.  Variants in EXOSC9 Disrupt the RNA Exosome and Result in Cerebellar Atrophy with Spinal Motor Neuronopathy (2018). The American Journal of Human Genetics
  86.   The Molecular Mechanism Underlying Pro-apoptotic Role of Hemocytes Specific Transcriptional Factor Lhx9 in Crassostrea hongkongensis (2018). Frontiers in Physiology
  87.  Overexpression of VaWRKY14 increases drought tolerance in Arabidopsis by modulating the expression of stress-related genes (2018). Plant Cell Reports
  88.  Compositional and transcriptomic analysis associated with cuticle lipid production on rosette and inflorescence stem leaves in the extremophyte Thellungiella salsuginea (2018). physiologia plantarum
  89.  Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods (2018). Nature Communications
  90.  Global expression profiling and pathway analysis of mouse mammary tumor reveals strain and stage specific dysregulated pathways in breast cancer progression (2018). Cell Cycle
  91.  STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection (2018). Nature Communications
  92.  DDM1 represses noncoding RNA expression and RNA-directed DNA methylation in heterochromatin (2018). Plant Physiology
  93.  Genetic screening and multipotency in rhesus monkey haploid neural progenitor cells (2018). Development
  94.  A novel PTCH1 mutation underlies nonsyndromic cleft lip and/or palate in a Han Chinese family (2018). oral diseases
  95.  Comparative transcriptome analysis of Sogatella furcifera (Horváth) exposed to different insecticides (2018). Scientific Reports
  96.  Identification of pathogens in culture-negative infective endocarditis with metagenomic analysis (2018). bioRxiv
  97.  Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform (2018). bioRxiv
  98.  Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy (2018). Journal of Pharmacology and Experimental Therapeutics
  99.  Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood (2018). bioRxiv
  100.  Transcriptome profiling of immune-responsive genes in the intestine of Cynoglossus semilaevis Günther challenged with Shewanella algae (2018). Fish & Shellfish Immunology
  101.  Expression of grape ACS1 in tomato decreases ethylene and alters the balance between auxin and ethylene during shoot and root formation (2018). Journal of Plant Physiology

 

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