Publications

BGI has generated over 2097 publications in top-tier journals, such as Nature and Science. *All links lead to external websites.

2017

Metagenomics

Microorganism

seeksv: an accurate tool for somatic structural variation and virus integration detection Link

2016

Metagenomics

Microorganism

A reference gene catalogue of the pig gut microbiome Link

2015

Plant & Animal Resequencing

Animal

Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing Link

2015

Epigenomics

BS-SNPer: SNP calling in Bisulfite-seq data Link

2015

RNA-seq(Q)

Human

Comparison of six different pretreatment methods for blood RNA extraction Link

2009

Plant & Animal Resequencing

Animal

Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx) Link

2012

RNA-seq(Q)

Human

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome Link

2016

Metagenomics

Microorganism

First report of human salivirus/klassevirus in respiratory specimens of a child with fatal adenovirus infection Link

2015

RNA-seq(Q)

Human

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells Link

2010

Plant & Animal Resequencing

Plant

Genome-wide patterns of genetic variation among elite maize inbred lines Link

2012

Small RNA

Plant

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing Link

2008

Epigenomics

Human

MethyCancer: the database of human DNA methylation and cancer Link

2015

Metagenomics

Microorganism

Mutational bias of Turnip Yellow Mosaic Virus in the context of host anti-viral gene silencing Link

2012

Plant & Animal Resequencing

Plant

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes Link

2010

Plant & Animal Resequencing

Plant

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection Link

2016

RNA-seq(Q)

Human

RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell Link

2010

Small RNA

Sequencing bias: comparison of different protocols of microRNA library construction Link

2016

Metagenomics

Microorganism

Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome Link

2010

Epigenomics

Animal

Single base-resolution methylome of the silkworm reveals a sparse epigenomic map Link

2016

RNA-seq(Q)

Human

Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis Link

2013

RNA-seq(Q)

Human

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data Link

2017

RNA-seq(Q)

Human

Single-cell RNA-seq reveals lincRNA expression differences in Hela-S3 cells Link

2013

Epigenomics

Human

Sorafenib Inhibits Epithelial-Mesenchymal Transition through an Epigenetic-Based Mechanism in Human Lung Epithelial Cells Link

2017

Small RNA

Plant

Transcriptome-Wide Identification and Prediction of miRNAs and Their Targets in Paris polyphylla var. yunnanensis by High-Throughput Sequencing Analysis Link

2010

Epigenomics

Human

Whole genome DNA Methylation analysis based on high throughput sequencing technology Link

2013

Plant & Animal Resequencing

Animal

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation Link

2013

De Novo Genome Sequencing

Plant

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation Link

2012

De Novo Genome Sequencing

Animal

Analyses of pig genomes provide insight into porcine demography and evolution Link

2016

Metagenomics

Microorganism

Detection of Listeria monocytogenes in CSF from Three Patients with Meningoencephalitis by Next-Generation Sequencing Link

2013

De Novo Genome Sequencing

Plant

Draft genome of the wheat A-genome progenitor Triticum urartu Link

2013

De Novo Genome Sequencing

Plant

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement Link

2016

Metagenomics

Microorganism

Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice Link

2015

De Novo Genome Sequencing

Plant

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution Link

2013

De Novo Genome Sequencing

Animal

Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome Link

2014

Metagenomics

Microorganism

Influenza H7N9 and H9N2 Viruses: Coexistence in Poultry Linked to Human H7N9 Infection and Genome Characteristics Link

2016

Metagenomics

Microorganism

Metagenome-wide association studies: fine-mining the microbiome Link

2013

De Novo Genome Sequencing

Animal

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse Link

2012

Metagenomics

Microorganism

Revised genome sequence of Burkholderia thailandensis MSMB43 with improved annotation Link

2012

De Novo Genome Sequencing

Animal

The oyster genome reveals stress adaptation and complexity of shell formation Link

2016

De Novo Genome Sequencing

Animal

The seahorse genome and the evolution of its specialized morphology Link

2012

De Novo Genome Sequencing

Plant

The tomato genome sequence provides insights into fleshy fruit evolution Link

2018

Exome

Human

C/EBP β enhances platinum resistance of ovarian cancer cells by reprogramming H3K79 methylation link

2014

Exome

Human

A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes
link

2014

Exome

Human

Human intracellular ISG15 prevents interferon-α/βover-amplification and auto-inflammation.
link

2015

Exome

Human

The UK10K project identifies rare variants in health and disease
link

2014

Exome

Human

Identification of genomic alterations in oesophageal squamous cell cancer
link

2014

Exome

Human

Activating Hotspot L205R Mutation in PRKACA and Adrenal Cushing's Syndrome
link

2013

Exome

Human

A large-scale screen for coding variants predisposing to psoriasis
link

2016

Exome

Human

Genomic heterogeneity of multiple synchronous lung cancer
link

2016

Exome

Human

Whole-exome sequencing implicates DGKH as a risk gene for panic disorder in the Faroese population
link